the bioinformatics chat
By Roman Cheplyaka
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Category: Life Sciences
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Subscribers: 74
Reviews: 2
Episodes: 134
Feb 27, 2021
Nov 1, 2020
Description
| Episode | Date |
|---|---|
|
#70 Prioritizing drug target genes with Marie Sadler
|
Dec 21, 2023 |
|
#69 Suffix arrays in optimal compressed space and δ-SA with Tomasz Kociumaka and Dominik Kempa
|
Sep 29, 2023 |
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#68 Phylogenetic inference from raw reads and Read2Tree with David Dylus
|
Aug 28, 2023 |
|
#67 AlphaFold and variant effect prediction with Amelie Stein
|
Jul 29, 2023 |
|
#66 AlphaFold and shape-mers with Janani Durairaj
|
Jul 10, 2023 |
|
#65 AlphaFold and protein interactions with Pedro Beltrao
|
Jun 21, 2023 |
|
#64 Enformer: predicting gene expression from sequence with Žiga Avsec
|
Nov 09, 2021 |
|
#63 Bioinformatics Contest 2021 with Maksym Kovalchuk and James Matthew Holt
|
Sep 27, 2021 |
|
#62 Steady states of metabolic networks and Dingo with Apostolos Chalkis
|
Jul 28, 2021 |
|
#61 3D genome organization and GRiNCH with Da-Inn Erika Lee
|
Jun 23, 2021 |
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#60 Differential gene expression and DESeq2 with Michael Love
|
May 12, 2021 |
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#59 Proteomics calibration with Lindsay Pino
|
Apr 21, 2021 |
|
#58 B cell maturation and class switching with Hamish King
|
Mar 31, 2021 |
|
#57 Enhancers with Molly Gasperini
|
Mar 10, 2021 |
|
#56 Polygenic risk scores in admixed populations with Bárbara Bitarello
|
Feb 17, 2021 |
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#55 Phylogenetics and the likelihood gradient with Xiang Ji
|
Jan 13, 2021 |
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#54 Seeding methods for read alignment with Markus Schmidt
|
Dec 16, 2020 |
|
#53 Real-time quantitative proteomics with Devin Schweppe
|
Nov 18, 2020 |
|
#52 How 23andMe finds identical-by-descent segments with William Freyman
|
Oct 27, 2020 |
|
#51 Basset and Basenji with David Kelley
|
Oct 07, 2020 |
|
#50 ENCODE3 with Jill Moore
|
Sep 10, 2020 |
|
#49 Most Permissive Boolean Networks with Loïc Paulevé
|
Aug 19, 2020 |
|
#48 Machine learning for drug development with Marinka Zitnik
|
Jul 29, 2020 |
|
#47 Reproducible pipelines and NGLess with Luis Pedro Coelho
|
Jun 24, 2020 |
|
#46 HiFi reads and HiCanu with Sergey Nurk and Sergey Koren
|
May 27, 2020 |
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#45 Genome assembly and Canu with Sergey Koren and Sergey Nurk
|
May 20, 2020 |
|
#44 DNA tagging and Porcupine with Kathryn Doroschak
|
Apr 29, 2020 |
|
#43 Generalized PCA for single-cell data with William Townes
|
Mar 27, 2020 |
|
#42 Spectrum-preserving string sets and simplitigs with Amatur Rahman and Karel Břinda
|
Feb 28, 2020 |
|
#41 Epidemic models with Kris Parag
|
Jan 27, 2020 |
|
#40 Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch
|
Dec 30, 2019 |
|
#39 Amplicon sequence variants and bias with Benjamin Callahan
|
Nov 29, 2019 |
|
#38 Issues in legacy genomes with Luke Anderson-Trocmé
|
Oct 22, 2019 |
|
#37 Causality and potential outcomes with Irineo Cabreros
|
Sep 27, 2019 |
|
#36 scVI with Romain Lopez and Gabriel Misrachi
|
Aug 30, 2019 |
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#35 The role of the DNA shape in transcription factor binding with Hassan Samee
|
Jul 26, 2019 |
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#34 Power laws and T-cell receptors with Kristina Grigaityte
|
Jun 29, 2019 |
|
#33 Genome assembly from long reads and Flye with Mikhail Kolmogorov
|
May 31, 2019 |
|
#32 Deep tensor factorization and a pitfall for machine learning methods with Jacob Schreiber
|
Apr 29, 2019 |
|
#31 Bioinformatics Contest 2019 with Alexey Sergushichev and Gennady Korotkevich
|
Mar 24, 2019 |
|
#30 Bayesian inference of chromatin structure from Hi-C data with Simeon Carstens
|
Feb 27, 2019 |
|
#29 Haplotype-aware genotyping from long reads with Trevor Pesout
|
Jan 27, 2019 |
|
#28 Space-efficient variable-order Markov models with Fabio Cunial
|
Dec 28, 2018 |
|
#27 Classification of CRISPR-induced mutations and CRISPRpic with HoJoon Lee and Seung Woo Cho
|
Nov 29, 2018 |
|
#26 Feature selection, Relief and STIR with Trang Lê
|
Oct 27, 2018 |
|
#25 Transposons and repeats with Kaushik Panda and Keith Slotkin
|
Sep 24, 2018 |
|
#24 Read correction and Bcool with Antoine Limasset
|
Aug 31, 2018 |
|
#23 RNA design, EteRNA and NEMO with Fernando Portela
|
Jul 27, 2018 |
|
#22 smCounter2: somatic variant calling and UMIs with Chang Xu
|
Jun 29, 2018 |
|
#21 Linear mixed models, GWAS, and lme4qtl with Andrey Ziyatdinov
|
May 31, 2018 |
|
#20 B cell receptor substitution profile prediction and SPURF with Kristian Davidsen and Amrit Dhar
|
Apr 30, 2018 |
|
#19 Genome fingerprints with Gustavo Glusman
|
Apr 07, 2018 |
|
#18 Bioinformatics Contest 2018 with Alexey Sergushichev and Ekaterina Vyahhi
|
Mar 03, 2018 |
|
#17 Rarefaction, alpha diversity, and statistics with Amy Willis
|
Jan 22, 2018 |
|
#16 Javier Quilez on what makes large sequencing projects successful
|
Dec 24, 2017 |
|
#15 Optimal transport for single-cell expression data with Geoffrey Schiebinger
|
Nov 26, 2017 |
|
#14 Generating functions for read mapping with Guillaume Filion
|
Nov 13, 2017 |
|
#13 Bracken with Jennifer Lu
|
Oct 21, 2017 |
|
#12 Modelling the immune system and C-ImmSim with Filippo Castiglione
|
Oct 08, 2017 |
|
#11 Collective cell migration with Linus Schumacher
|
Sep 18, 2017 |
|
#10 Spatially variable genes and SpatialDE with Valentine Svensson
|
Sep 03, 2017 |
|
#9 Michael Tessler and Christopher Mason on 16S amplicon vs shotgun sequencing
|
Aug 18, 2017 |
|
#8 Perfect k-mer hashing in Sailfish
|
Aug 05, 2017 |
|
#7 Metagenomics and Kraken
|
Jul 09, 2017 |
|
#6 Allele-specific expression
|
Jun 25, 2017 |
|
#5 Relative data analysis and propr with Thom Quinn
|
Jun 10, 2017 |
|
#4 ChIP-seq and GenoGAM with Georg Stricker and Julien Gagneur
|
May 29, 2017 |
|
#3 miRNA target site prediction and seedVicious with Antonio Marco
|
May 12, 2017 |
|
#2 Single-cell RNA sequencing with Aleksandra Kolodziejczyk
|
Apr 29, 2017 |
|
#1 Transcriptome assembly and Scallop with Mingfu Shao
|
Apr 16, 2017 |